PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family YABBY
Protein Properties Length: 501aa    MW: 55827.1 Da    PI: 8.3435
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743472genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY260.42.7e-80172032170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesasts 95 
                d+ ss++q+ yv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsv++++++ ll+++s+l++sl ++      llee+++ ++n+++n++++++a ++
  676743472  17 DHISSTDQLGYVHCNFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVNMRAVLLPSVSNLGHSLLPPsppppnLLEEMRNGGQNINMNMMMSHQAAAH 116
                7899***************************************************************99999999************************* PP

      YABBY  96 vssekl......senedeevprvppvirPPekrqrvPsaynrfik......eeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                +s+e+l       + +++e+pr+pp++rPPekrqrvPsaynrfik      eeiqrika+nPdishreafsaaaknWahfP+ihfgl
  676743472 117 HSNESLvmatrnGRVDQQEIPRPPPANRPPEKRQRVPSAYNRFIKyinldrEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 203
                ***99989987767789***************************88888889*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-6421203IPR006780YABBY protein
PROSITE profilePS5020228.613230358IPR000535Major sperm protein (MSP) domain
Gene3DG3DSA:2.60.40.3605.7E-36249356IPR008962PapD-like
SuperFamilySSF493541.02E-38250371IPR008962PapD-like
PfamPF006356.4E-30251343IPR000535Major sperm protein (MSP) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0005783Cellular Componentendoplasmic reticulum
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSSMSMSSSS APAYSPDHIS STDQLGYVHC NFCDTVLAVS VPPSSLFKTV TVRCGHCSNL  60
LSVTVNMRAV LLPSVSNLGH SLLPPSPPPP NLLEEMRNGG QNINMNMMMS HQAAAHHSNE  120
SLVMATRNGR VDQQEIPRPP PANRPPEKRQ RVPSAYNRFI KYINLDREEI QRIKAGNPDI  180
SHREAFSAAA KNWAHFPHIH FGLMPDHPPT KKANVRQQER LFLLEISEVM YNMFPCQKDA  240
KLEERYRLTV ELKKQSSCSM QLTNKTTKVV AFKVKTTNPR KYCVRPNTGV VLPGDSCNVT  300
VTMQAQKEAP LDMQCKDKFL VQSVIVSDGT TSKEVLAEMF NKEAGRVIED FKLRVVYIPA  360
NPPSPVPEGS EEGNSPRTSL NEIASQTGSL FDDVSRTLEE TNEKSSEAWS MISKLTEEKT  420
SAIQQSQKLR QELVRLDPER TLSSDLLVFI EGITYMDIYI GCTQEMLKKE SSKKQSGGVS  480
LVLMLLVGLL GCVIGYILNR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ikk_A5e-1325735729125Vesicle-associated membrane protein-associate
3ikk_B5e-1325735729125Vesicle-associated membrane protein-associate
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019170.0BT001917.1 Arabidopsis thaliana clone C105174 putative proline-rich protein (At4g00170) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567153.11e-124vesicle-associated protein 1-3
SwissprotQ84WW51e-126VAP13_ARATH; Vesicle-associated protein 1-3
TrEMBLV4L2031e-122V4L203_EUTSA; Uncharacterized protein
STRINGAT4G00170.11e-124(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.12e-98YABBY family protein